The Robert Koch Institute (RKI), Germany’s premier public health organization, faces a critical juncture as the future of its Integrated Genomic Surveillance (IGS) program, a vital tool for pathogen monitoring and pandemic preparedness, hangs in the balance. According to reports from “Tagesspiegel Background Gesundheit & E-Health” the Federal Ministry of Health (BMG) is reportedly planning to phase out federal funding for the initiative at the close of 2025.
A Ministry spokesperson confirmed the planned cessation of the currently federally-funded project phase, stating that, like all research initiatives, the IGS program was subject to time limitations. The BMG has invested approximately €18 million since 2021 for the “conceptualization and establishment of a pathogen-independent IGS”. The plan stipulates that the RKI is expected to continue the work from its own budget starting in 2026.
This transition presents a significant challenge for the RKI. The Institute’s budget, totaling roughly €192 million in the 2025 fiscal year, is predominantly committed – approximately three-quarters – towards personnel and mandated duties. This leaves a limited and flexible portion available for research and development projects, raising serious doubts about the feasibility of absorbing the IGS program’s operational costs.
The impending funding cut has drawn immediate and sharp criticism from scientific experts. Michael Müller, Chairman of the Accredited Laboratories in Medicine (ALM), denounced the decision as a “severe setback” for the work already accomplished. He underscored the necessity of integrated genomic surveillance to maintain alignment with international standards, arguing that systematic pathogen sequencing comparison is crucial for early detection of widespread infectious diseases.
Researchers at the National Reference Centers have echoed these concerns, warning of potentially devastating consequences. Stefan Niemann, scientific director of the Reference Center for Mycobacteria, described the threatened funding withdrawal as “devastating” pointing to the risk of dismantling painstakingly developed networks and capacity. “Years of progress risk being undone” he warned.
The IGS program has been instrumental in providing critical insights into the evolution of antimicrobial resistance and the dissemination of important pathogen strains. Its curtailment would undoubtedly weaken Germany’s standing in European and international health research.
While the BMG maintains that the IGS remains “an important component of a future-proof surveillance of pathogens” and promises to explore options for continued development and financing in conjunction with the RKI, concrete commitments remain conspicuously absent. This lack of clarity raises serious questions about the government’s long-term commitment to proactive public health infrastructure and its ability to effectively anticipate and respond to future health threats, particularly in an era of increasing global interconnectedness and evolving infectious disease landscapes. The decision reveals a potentially shortsighted approach to essential research and preparedness, prioritizing budgetary constraints over critical public health security.



